Program: BLASTN   Use MegaBlast

Database Brassica_rapa_genome Erysiphe_pisi_V2_public G_orontii_V1_public TAIR9_cds_20090619 TAIR9_pep_20090619 aa_all_newbler06 arabidopsis_lyrata_genomic.fasta capsella_rubella.fasta chi_aa_v1 chi_cds_v1 chi_v1 colletotrichum_higginsianum_public_v1 eutrema_parvulum_genome nr nt solanum_lycopersicum_scaffolds_20091201.fasta solanum_phureja_genomic_scaffolds.fasta swissprot

Enter here your input data as Sequence in FASTA format Accession or GI   

Or load it from disk

Please read about FASTA format description

Set subsequence: From         To

Expect 0.0001 0.01 1 10 100 1000    Perform ungapped alignment

Word Size 12 12 16 20 24 28 32 48 64     Percent Identity    None 99 98 95 90 85 80 75 70 60

Discontiguous Word options   Template length Contiguous 16 18 21 Template type Coding Non-coding Two templates Require 2 word hits for extension

Other advanced options:        Show Tax Blast reports

Return alignment endpoints only