Program blastn blastp blastx tblastn tblastx Database Brassica_rapa_genome Erysiphe_pisi_V2_public G_orontii_V1_public TAIR9_cds_20090619 TAIR9_pep_20090619 aa_all_newbler06 arabidopsis_lyrata_genomic.fasta capsella_rubella.fasta chi_aa_v1 chi_cds_v1 chi_v1 colletotrichum_higginsianum_public_v1 eutrema_parvulum_genome nr nt solanum_lycopersicum_scaffolds_20091201.fasta solanum_phureja_genomic_scaffolds.fasta swissprot
Enter here your input data as Sequence in FASTA format Accession or GI Or load it from disk
Please read about FASTA format description
Set subsequence: From To
Expect 0.0001 0.01 1 10 100 1000 Matrix PAM30 PAM70 BLOSUM80 BLOSUM62 BLOSUM45 Perform ungapped alignment
Query Genetic Codes (blastx only) Standard (1) Vertebrate Mitochondrial (2) Yeast Mitochondrial (3) Mold Mitochondrial; ... (4) Invertebrate Mitochondrial (5) Ciliate Nuclear; ... (6) Echinoderm Mitochondrial (9) Euplotid Nuclear (10) Bacterial (11) Alternative Yeast Nuclear (12) Ascidian Mitochondrial (13) Flatworm Mitochondrial (14) Blepharisma Macronuclear (15)
Database Genetic Codes (tblast[nx] only) Standard (1) Vertebrate Mitochondrial (2) Yeast Mitochondrial (3) Mold Mitochondrial; ... (4) Invertebrate Mitochondrial (5) Ciliate Nuclear; ... (6) Echinoderm Mitochondrial (9) Euplotid Nuclear (10) Bacterial (11) Alternative Yeast Nuclear (12) Ascidian Mitochondrial (13) Flatworm Mitochondrial (14) Blepharisma Macronuclear (15)
Frame shift penalty for blastx 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 25 30 50 1000 No OOF
Limit search to results of Entrez query
Other advanced options: Show Tax Blast reports
